Dr.Cox > House. always.
i have to say my favourite episode of Scrubs ever is titled: “My Lunch” from Season 5
it has such a great flow, excellent filming techniques, the acting is phenomenal, and John C. McGinley knocks it out of the park completely as Dr.Cox in this episode, he tries to damn hard to keep all the organ transplant patients healthy and then it all crashes and the J.D. being there for Cox and Cox being there for J.D. stuff was just beautiful and also the final guest appearance of Nicole Sullivan being alive in the series is just amazing, her character was so well written and played and it just meshed into the story perfectly and it all comes to an epic tear educing moment at the end leaving you thinking “give Cox a break! hes trying so damn hard and loses everything!” its so brutal yet beautiful, it gets me everytime its just wonderful. :)